rs36938353 SNP Detail

Summary

• ID
  rs36938353
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:101690546 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTTTGGTCC AAGGCCTTTT
  TCTCTACAGG GTGTTTGATC CATCCAGAAA CCTAAGCCTT TGGTACAGAG CTCTCTTTGG
  AGCGTCAAGG CAAGAGCAGA TAGATGGGGA ACCAGGCAGT GATGCACCTG GGGGAATGAC
  ACCGTTTCTC CTTCATCTTT ATGTCACAGA GGCTAACCTT TACTGCACTC AAAACTGCTT
  M
  CTAAGTACCC GAGCAAATCC ATTTGAGATA AACAAACAAA CAAACAAAAA ACCTTGATCT
  GATCTTGACT CTGCAACTCA AGCAAATCCC CAAAGCTCTC TCAACTCCAT CCCTTAGCAA
  GGTGCTTCAT CCCTTGTGGC ATTGTTGGGA GTCAGAGAAC TGAAACCCGA AAGAAGTTGA
  TGAACTAGAA TGTTCTAAAG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51581972	NES14671586	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	A	C	C	C	A	C	C	A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36938353					SNP	C	C	C	C	C	C	A	C	C	C	A	C	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51581972	NES14671586	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:101690546 () rs orientation: forward

Symbol	Name	Function Class
Rr582119	regulatory region 582119	1803 bp distal
Rr582120	regulatory region 582120	1444 bp proximal