rs3693792 SNP Detail

Summary

• ID
  rs3693792
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:148020537 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGTGC TCTTACCAAC AGGGCTCACC
  M
  ACCGGAGCCC TCCACATTCC TACCA                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C3H/HeJ	C57BL/6J	DBA/2J	LG/J	SM/J
ss5069933	WI_WGS_4_143295338	WI	MOUSE	f	SNP				A	C
ss45617836	mCV23034445	ABI	CRAMUS_MOUSE	f	SNP	A	A	C		C	A
ss147987389	ENSMUSSNP6309969	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	C
ss321415844	CHEV_4_147310189	CHEVERUD	SCREENING_POP	f	SNP							A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C3H/HeJ	C57BL/6J	DBA/2J	LG/J	SM/J
rs3693792					SNP	A	A	C	A	C	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:148020537 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi15284	CpG island 15284			168 bp proximal
Plod1	procollagen-lysine, 2-oxoglutarate 5-dioxygenase 1			Intron
				Noncoding-Transcript-Variant
Rr377387	regulatory region 377387			1197 bp upstream
Rr604526	regulatory region 604526			635 bp proximal
Rr604527	regulatory region 604527			1322 bp proximal
Rr604528	regulatory region 604528			1977 bp proximal
Tssr40234	transcription start site region 40234			733 bp upstream
Tssr44566	transcription start site region 44566			633 bp downstream
Tssr44567	transcription start site region 44567			681 bp downstream