rs36929457 SNP Detail

Summary

• ID
  rs36929457
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:23010537 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTTTTCTTT TTTTTTAATC
  GCCATCTTAC TTATTTAATT TAATGTCTAG TGCAATTTGA GATGCAAAAG AAAAGATACA
  CTGTAACTGA GAAAATGCTT GGTTTACTTA CAAACCTATA GGATTCTATC ATTTCTCAGT
  TCCCCCTGCT GGTGAGGAGG AAGTTTTAGG CCAACACTTT GAAGGAACTC AGCCACCCAG
  K
  ATGGCTACTT GGATCATACC CAAGGTTTAC ATGGTCCTGT TGTGGGTCAA GAAACTCCAT
  TGATTTAGTC AGATATGCTG GCCAGATAAT AGAGAACATT CCAGAGATAT AAGAGCTTTC
  TTTATTCACG GGTGGTTAGG AGATTATGGT CCTCAGTGAG TGACAGGGCT GGGCTTCTGT
  GACTTTCTCA TGTCAAATGT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss51439436	NES14444100	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	G	T	T	T		G	G	T	G		G
ss320686042	CHEV_3_22855295	CHEVERUD	SCREENING_POP	f	SNP											T					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs36929457					SNP	T	T	T	T	T	T	G	T	T	T	T	G	G	T	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51439436	NES14444100	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:23010537 () rs orientation: forward

Symbol	Name	Function Class
Rr574243	regulatory region 574243	44 bp distal