rs36925304 SNP Detail

Summary

• ID
  rs36925304
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:97717582 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTAGCATTAC ATTTGAATAC
  TATTTAGTTC TAAATAAAAT CAAATCTACC AAAAATGTTG AATGTACTTT CTGTAATGCA
  AAAATACCAT TTTCATATTT TTAATTTTTC TAGTTTTCCA TTAAAAAATT ATCCCTATCA
  TTTACCCATC TTCATGAGAT TAAATTAGCA AAATCTAACA GCCTGGAGGC CTGCCCTACC
  S
  ACGGTTTACT AGATGAGGGC TAAATTACTT TAATTTTCTT GGTCAAGTGC CCCTCACAGC
  GCTGGCTCTT CACGCCATGT GGACTTAATA AAAGCTGACA AGTGAGACCG GAGCCGAGGC
  TGTTCAGCAC GGGAAGTGTT GCTGAATGCA GAGCCTGGTG ATTCAGACAC TGTCGGTAGC
  AGCTCCCGCC TTTGTGGACA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ
ss51376251	NES13728234	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	C	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ
rs36925304					SNP	G	G	G	G	G	G	C	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51376251	NES13728234	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:97717582 () rs orientation: forward

Symbol	Name	Function Class
Rr399782	regulatory region 399782	108 bp downstream
Rr635214	regulatory region 635214	195 bp distal
Rr635215	regulatory region 635215	292 bp distal
Rr635216	regulatory region 635216	within coordinates