rs3692117 SNP Detail

Summary

• ID
  rs3692117
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:148858810 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTAACCCAGG GCTTGGATGG AGATGAGCGG CTTAGACAGC
  ATACTGAGCC AGCATGGGGG GGGGTGGGGG GGCTTGGGAG AGGCAGAGAG TTTCTGATTT
  K
  CGGGGGAGTC ACAGTGAAGG CGAAGAGAAA GGGAATTTAT CTGGAAGGTT CAGGGCTGAG
  GTGAATCCCT GGGGCATACG GACAGATGGA TCCGTTTGT                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss5068243	WI_WGS_4_144150363	WI	MOUSE	f	SNP	G							T
ss46697722	NES10934235	PERLEGEN	MM_PANEL2	f	SNP	G		G	G	G	G	G		T	G	T	G		G	T	G	T		G
ss148018773	ENSMUSSNP5521112	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G							G
ss321422835	CHEV_4_148148462	CHEVERUD	SCREENING_POP	f	SNP													T					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs3692117					SNP	G	G	G	G	G	G	G	T	T	G	T	G	T	G	T	G	T	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46697722	NES10934235	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:148858810 () rs orientation: forward

Symbol	Name	Function Class
Rr604757	regulatory region 604757	1151 bp proximal