rs3691759 SNP Detail

Summary

• ID
  rs3691759
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:56548354 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCAGATGAC ATCTGAAAGC
  CAGGTCTACC CTTCTCTGTT GCTAGAAACC CTGCGAGTTA AAGGTGGATA TTACATTTTT
  AAATGGTTTG GCACATTAAA AAAGTATAAA GAACTCAGTT CTCTCTCGAT TTTCTCACAG
  ACTCTGTAGC CTGGCTTTAG AGCCTTTTCT CTAACTGAGC TGCCTTGTCT TGGCTCAATG
  R
  AGAAAATGCA ACTTCTCCTG CATCAACTTG ATATTCTAAG GCTGTCCCCT TCTGTGAGGA
  CAAAAGGGTG AGGGATAGGG GAGGGGAGTA GTACAGACTG GGAGGGGAAG AGGAAAGAGA
  AACTGTAATC TGGGTGTAAA GTAAATATGT TAATTAACGA ATGAAAAATA TATAAAGAAC
  TCAAAAGTTG GAAGTGGTGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J
ss5067884	WI_WGS_6_56979756	WI	MOUSE	f	SNP	A		G
ss133228506	ENSMUSSNP6335322	ENSEMBL	ENSEMBL_Sanger	f	SNP		G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J
rs3691759					SNP	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:56548354 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm66600	predicted gene, 66600			1976 bp downstream
Pde1c	phosphodiesterase 1C			Intron
				Noncoding-Transcript-Variant
Rr631076	regulatory region 631076			1954 bp distal