rs36916039 SNP Detail

Summary

• ID
  rs36916039
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:57523234 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCTTAAACA AGAAGACAGA
  AATCCACAGA GAAAGTGGGG CTTGTGTGTG TGCTGCTGCA GATCTAACCT GGGGTCTTGT
  GCATGTGTCT GCTGAGTCAC ATAACCCCCT AAAGGAAGAA GCAGATTTGT ATTCAAGTCC
  TCTCCCGAGG AAAGTCAGGA AGTTTTGAAA TGTCTACTCC ACTTTTCCAA ACTTTCCATG
  R
  GCAGATCCTG GCCCTCACCA ATCTTTGGTC CCACTACTTC TCCAAATAGA TCCTTCCTCT
  ATTCAAAACT CTTTATCCCA ACCTGCCAGG AAGGTCTCGC CTCTTCGCTT CGTTAACTTC
  CTAGGAATCA ATCTGTATTT TCTGCTTAGT TTTTTTTTTT TTTTTCCCTG TCATAAGACT
  TGAGGGGATT AAAATGAAAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
ss51315033	NES13763312	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	A	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
rs36916039					SNP	G	G	G	G	A	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51315033	NES13763312	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:57523234 () rs orientation: forward

Symbol	Name	Function Class
Gm45193	predicted gene 45193	within coordinates
Gm66279	predicted gene, 66279	within coordinates
Rr631145	regulatory region 631145	785 bp distal