rs36913617 SNP Detail

Summary

• ID
  rs36913617
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:105443325 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAGGCATTC AGCTCCCTGT
  AGAGACTCTA GGGACAAAGA AAGGAAGCTC CCGGTTCTCT CCCACAGAGC CAAAGCCAGA
  GAAAGCAGGA CATGGAATCT AGAACACAGG TGGGGAGCTT AAATGTGGAG AAGAGAGAGA
  CTTCGGTCCT CTGGGATGGG AAGTAAGGAT AGCCAGTTGT GTGAATGTTA GTTCACGGAG
  Y
  GGCCAATTTG TTAGAAATGA CCAATTCTGT CAATTTACCA AAATTTTATT TCTCTTAATT
  ATGTGTAAAA TTTACAACAA TTTGCAAGGT GGGGTTCATT TAAGCAAATT TTGAAGACTT
  CTACTCAGTA TCAGTGTTGT TTGAAGTTTA ATTCAATTCA ATTCAATCTA TTTAGTTTTT
  AATTTATTTG CAGCTGTTTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss51920711	NES14945659	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C		C	T	C	C		C
ss322370594	CHEV_7_112942632	CHEVERUD	SCREENING_POP	f	SNP											C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs36913617					SNP	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51920711	NES14945659	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:105443325 () rs orientation: forward

Symbol	Name	Function Class
D7Mit302	DNA segment, Chr 7, Massachusetts Institute of Technology 302	352 bp proximal
Rr652817	regulatory region 652817	89 bp distal