rs3691074 SNP Detail

Summary

• ID
  rs3691074
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:56548224 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAAAGAAGC ATAGATTGTA
  CTTGCTCTAC CCCACGTGCT CTGTCGAGAA ATGCAATACA GCAAGGAAAC CAAGCCAAGG
  CAACCAAGCA AACACAGTGG TCCTCTCTTC TTATAGTTGG AGCAGGTGTC ATCAGATGAC
  ATCTGAAAGC CAGGTCTACC CTTCTCTGTT GCTAGAAACC CTGCGAGTTA AAGGTGGATA
  Y
  TACATTTTTA AATGGTTTGG CACATTAAAA AAGTATAAAG AACTCAGTTC TCTCTCGATT
  TTCTCACAGA CTCTGTAGCC TGGCTTTAGA GCCTTTTCTC TAACTGAGCT GCCTTGTCTT
  GGCTCAATGG AGAAAATGCA ACTTCTCCTG CATCAACTTG ATATTCTAAG GCTGTCCCCT
  TCTGTGAGGA CAAAAGGGTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J
ss5067193	WI_WGS_6_56979626	WI	MOUSE	f	SNP	C			T
ss133228500	ENSMUSSNP5283328	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J
rs3691074					SNP	C	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:56548224 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm66600	predicted gene, 66600			1846 bp downstream
Pde1c	phosphodiesterase 1C			Intron
				Noncoding-Transcript-Variant
Rr631076	regulatory region 631076			1824 bp distal