rs3691056 SNP Detail

Summary

• ID
  rs3691056
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:56548208 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTTTGGGTC TGAGAGCAAA
  AGAAGCATAG ATTGTACTTG CTCTACCCCA CGTGCTCTGT CGAGAAATGC AATACAGCAA
  GGAAACCAAG CCAAGGCAAC CAAGCAAACA CAGTGGTCCT CTCTTCTTAT AGTTGGAGCA
  GGTGTCATCA GATGACATCT GAAAGCCAGG TCTACCCTTC TCTGTTGCTA GAAACCCTGC
  R
  AGTTAAAGGT GGATATTACA TTTTTAAATG GTTTGGCACA TTAAAAAAGT ATAAAGAACT
  CAGTTCTCTC TCGATTTTCT CACAGACTCT GTAGCCTGGC TTTAGAGCCT TTTCTCTAAC
  TGAGCTGCCT TGTCTTGGCT CAATGGAGAA AATGCAACTT CTCCTGCATC AACTTGATAT
  TCTAAGGCTG TCCCCTTCTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J
ss5067175	WI_WGS_6_56979610	WI	MOUSE	f	SNP	A			G
ss133228496	ENSMUSSNP690197	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J
rs3691056					SNP	A	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:56548208 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm66600	predicted gene, 66600			1830 bp downstream
Pde1c	phosphodiesterase 1C			Intron
				Noncoding-Transcript-Variant
Rr631076	regulatory region 631076			1808 bp distal