rs36904971 SNP Detail

Summary

• ID
  rs36904971
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:83697113 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCCAGCAGA GAGTACAGGG
  CGTGGTGGGA CGCAGGACCT TTCATCATGT AGGAGGACCC GCAGAACGTG CCCATGCCAC
  ACTGAGGAGT CCCTCACTAC GCTAGGGAGG TGCGCAGTGC ATGGTGACCT GGGCTCCGGA
  GGAGGTACCA CTGCAGCCAC AGCCAGGCCA CCCGCCCGGC CACTGTCAGC TCGGCTCCAA
  Y
  GCGGACTCTG CTACACTCTC CCGGCGGGGA TCCGACGCGG CGACGATCAT GGCGGAGCTC
  AAAGCGGCGG CCGTGCTGGA GGTAGCCCCG CAGCTCGAGC AGGTACCCGC GGGGTGAGAG
  CCAGGGACCC CGCACGAGTC CTGAGGATGT GGCCCCGCAA GCGCGAGACG CGGTCTGTTC
  TCCAAGACTC CGCCCACAGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51559283	NES14677632	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36904971					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51559283	NES14677632	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:83697113 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13301	CpG island 13301	within coordinates
Gm7115	predicted gene 7115	within coordinates
Gm26771	predicted gene, 26771	within coordinates
Gm66689	predicted gene, 66689	within coordinates
Rr578903	regulatory region 578903	within coordinates
Rr578904	regulatory region 578904	123 bp proximal
Rr578905	regulatory region 578905	426 bp proximal
Rr578906	regulatory region 578906	555 bp proximal
Rr578907	regulatory region 578907	1576 bp proximal
Tssr33830	transcription start site region 33830	134 bp downstream
Tssr33831	transcription start site region 33831	167 bp downstream