rs3690488 SNP Detail

Summary

• ID
  rs3690488
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:56548126 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCAGCCTTCT CTGTGCAGAG
  CTCTCACACC AGCTAAACCA GACAGAGCTC AATGCTAGCG TTACATAATT CAGGAAAGAA
  TGAGTTTGGG TCTGAGAGCA AAAGAAGCAT AGATTGTACT TGCTCTACCC CACGTGCTCT
  GTCGAGAAAT GCAATACAGC AAGGAAACCA AGCCAAGGCA ACCAAGCAAA CACAGTGGTC
  Y
  TCTCTTCTTA TAGTTGGAGC AGGTGTCATC AGATGACATC TGAAAGCCAG GTCTACCCTT
  CTCTGTTGCT AGAAACCCTG CGAGTTAAAG GTGGATATTA CATTTTTAAA TGGTTTGGCA
  CATTAAAAAA GTATAAAGAA CTCAGTTCTC TCTCGATTTT CTCACAGACT CTGTAGCCTG
  GCTTTAGAGC CTTTTCTCTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J
ss5066600	WI_WGS_6_56979528	WI	MOUSE	f	SNP	T		C
ss133228490	ENSMUSSNP3482397	ENSEMBL	ENSEMBL_Sanger	f	SNP		C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J
rs3690488					SNP	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:56548126 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm66600	predicted gene, 66600			1748 bp downstream
Pde1c	phosphodiesterase 1C			Intron
				Noncoding-Transcript-Variant
Rr631076	regulatory region 631076			1726 bp distal
Tssr1858	transcription start site region 1858			1960 bp upstream
Tssr61137	transcription start site region 61137			1938 bp upstream