rs36904191 SNP Detail

Summary

• ID
  rs36904191
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:151898727 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGTCTTGTTC AGTTTCAACT
  AGCGTCGCTC TAAAAGGACA AAAAACTTCT TGTTTTTCTA AATAAAACAT AAATGGCCCA
  GAATTTGAAT TGCCGATCTT AAAATTTTAA GTGACTGAAG ATTCTATTAA TTCTGGCAAT
  AAAATCATTA AAAACAAAAC AGGTTGCATA AGACTTTTAA ACAATTCATT CACAGGCATG
  R
  GAATTTAAGG TTTCTTTTAA AATATAAAAT GCTAAAACAA TAAGTCTAAC AGGAGAATAT
  GAATAATACA ATATTCTAAG AAAAAAACCC ACAAAGACAA ACATGACATT TCATTCATAG
  CTCATTCAAA TAATCAAGGA TTAAACCTTA GTTTTAACCT GTTATTTTTC TTTTTATTTT
  AGTATGTCTG ATGTTCTCAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	DBA/2J	FVB/NJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
ss51060584	NES13427683	PERLEGEN	MM_PANEL2	f	SNP	A	A	A		A	A	G
ss321028370	CHEV_3_151856054	CHEVERUD	SCREENING_POP	f	SNP				G				G
SNP Consensus Information
SNP					Consensus Type	AKR/J	DBA/2J	FVB/NJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
rs36904191					SNP	A	A	A	G	A	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51060584	NES13427683	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:151898727 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Dnajb4	DnaJ heat shock protein family (Hsp40) member B4			Intron
				Noncoding-Transcript-Variant
Gm40180	predicted gene, 40180			883 bp upstream
Gm64624	predicted gene, 64624			118 bp downstream
Rr587481	regulatory region 587481			1549 bp distal
Rr587482	regulatory region 587482			1243 bp distal
Rr587483	regulatory region 587483			751 bp distal
Rr587484	regulatory region 587484			745 bp proximal
Tssr36163	transcription start site region 36163			633 bp downstream
Tssr36164	transcription start site region 36164			657 bp downstream
Tssr36165	transcription start site region 36165			683 bp downstream
Tssr36166	transcription start site region 36166			713 bp downstream
Tssr36167	transcription start site region 36167			743 bp downstream