rs36902665 SNP Detail

Summary

• ID
  rs36902665
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:72592447 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTCCAAGTT AGGGGAGGGG
  AATTACAGTT AGGTCAGGTC ATGACTCACG TCCAACTTGG CACTTTACAG CAGAACTGAG
  AGGAAACAAG TCACATGATG AAAACACCTG ATTTACAAAA CTTAGTTTTA TAAGCCCCAG
  CAGGGTCTAT GGAAAAAACA AGATGATCTT AAAATTCTCA AAGCTCACAG GCAGATGAGT
  R
  ACAGATAGCT GTCCATGAAC AAAGAACTTA GGGTCCTGGA AATCCCAGTC CCCTCTTACC
  TTTCGTTTGT TGTGGTAAGC AATATAGAGG ACAGCAACAA GAACAGCAGC GGTCACTAGA
  TATGCAAAGA AGTGGCTGCT CTCTGCACTG GTGTTTCCAG AACTGTCCTT ATAAAGATCA
  TCCTTCTCAT TCTTCATAGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51695124	NES14819723	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	A	A	A	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36902665					SNP	G	G	G	G	G	G	G	G	A	A	A	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51695124	NES14819723	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:72592447 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17549	CpG island 17549	674 bp proximal
Gm20536	predicted gene 20536	within coordinates
Gm67593	predicted gene, 67593	1309 bp upstream
Rr399708	regulatory region 399708	1178 bp upstream
Rr632243	regulatory region 632243	within coordinates
Rr632244	regulatory region 632244	819 bp proximal
Rr632245	regulatory region 632245	1272 bp proximal
Rr632246	regulatory region 632246	1364 bp proximal
Rr632247	regulatory region 632247	1526 bp proximal
Tgoln1	trans-golgi network protein	Intron
Tssr57152	transcription start site region 57152	1391 bp upstream
Tssr61478	transcription start site region 61478	1261 bp downstream