rs36901088 SNP Detail

Summary

• ID
  rs36901088
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:116645857 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCATCAGCTA CTCAGAGGAG
  ACAGGATGGA AGCCAGGAAG CCAGCCTGGG AAGACCCTGG TTTCTTACAA GGTAAACAGA
  GAAGCTTGGC AGGGGAAGAG TATGGCACAG CATCCTGGGA GGATCTCAGG ATGCAGTGAG
  GGGAGGAGTC GGGGGAGGAG TCGAGGGAGG AGTTGGGGGA GGAGTGGAGG CTAAGGAGGA
  Y
  CATTCAGGAC CATTCAGCAA AATAGGCTCT TGCAATTACA GGTTGCAACC ACAGGCAATA
  GGTCTCATGG GGGAGGGGCG TAGGGCCCTT AGAAAACAGC GTCTGTACTG GAACAACTTT
  ATTGTTTATT AATGATTTAG TTGTTGTCAT CAGCTCCACG GCCTTCAGTG AGTCACCTGG
  CTTCCCTGGA TGTCAAACAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss51859265	NES14882431	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	T	T	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs36901088					SNP	C	C	C	C	C	T	T	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51859265	NES14882431	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:116645857 () rs orientation: forward

Symbol	Name	Function Class
Rassf4	Ras association (RalGDS/AF-6) domain family member 4	Intron
Rr637228	regulatory region 637228	within coordinates
Rr637229	regulatory region 637229	266 bp proximal
Rr637230	regulatory region 637230	1088 bp proximal
Rr637231	regulatory region 637231	1364 bp proximal
Tssr58383	transcription start site region 58383	489 bp upstream
Tssr58384	transcription start site region 58384	527 bp upstream
Tssr62604	transcription start site region 62604	505 bp upstream
Tssr62605	transcription start site region 62605	481 bp upstream