rs3690043 SNP Detail

Summary

• ID
  rs3690043
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:109722125 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCTTT GTACAATTCG GTAGTCATAG
  Y
  AACCAGAAAG TACCAGTTAA GCATT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss5066148	WI_WGS_2_110847062	WI	MOUSE	f	SNP	C			T
ss45309642	mCV23789029	ABI	CRAMUS_MOUSE	f	SNP		C	C	T	C
ss147205637	ENSMUSSNP424	ENSEMBL	ENSEMBL_Sanger	f	SNP			C		C
ss320456058	CHEV_2_109731937	CHEVERUD	SCREENING_POP	f	SNP						T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs3690043					SNP	C	C	C	T	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:109722125 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12038	CpG island 12038	400 bp distal
Gm54141	predicted gene, 54141	927 bp upstream
Lin7c	lin-7 homolog C, crumbs cell polarity complex component	Intron
Rr397174	regulatory region 397174	829 bp downstream
Rr562499	regulatory region 562499	969 bp distal
Rr562500	regulatory region 562500	1503 bp distal
Rr562501	regulatory region 562501	917 bp distal
Rr562502	regulatory region 562502	within coordinates
Tssr19303	transcription start site region 19303	898 bp downstream