rs3689972 SNP Detail

Summary

• ID
  rs3689972
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:56548079 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATATAGCACA CCTACAGAAT
  TACTAAATTC ATTGTCTCAG TCCTAAAGCA GCCTTCTCTG TGCAGAGCTC TCACACCAGC
  TAAACCAGAC AGAGCTCAAT GCTAGCGTTA CATAATTCAG GAAAGAATGA GTTTGGGTCT
  GAGAGCAAAA GAAGCATAGA TTGTACTTGC TCTACCCCAC GTGCTCTGTC GAGAAATGCA
  W
  TACAGCAAGG AAACCAAGCC AAGGCAACCA AGCAAACACA GTGGTCCTCT CTTCTTATAG
  TTGGAGCAGG TGTCATCAGA TGACATCTGA AAGCCAGGTC TACCCTTCTC TGTTGCTAGA
  AACCCTGCGA GTTAAAGGTG GATATTACAT TTTTAAATGG TTTGGCACAT TAAAAAAGTA
  TAAAGAACTC AGTTCTCTCT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J
ss5066077	WI_WGS_6_56979481	WI	MOUSE	f	SNP	T			A
ss133228487	ENSMUSSNP4069185	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J
rs3689972					SNP	T	T	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:56548079 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm66600	predicted gene, 66600			1701 bp downstream
Pde1c	phosphodiesterase 1C			Intron
				Noncoding-Transcript-Variant
Rr631076	regulatory region 631076			1679 bp distal
Tssr1858	transcription start site region 1858			1913 bp upstream
Tssr61136	transcription start site region 61136			1972 bp upstream
Tssr61137	transcription start site region 61137			1891 bp upstream