rs3689949 SNP Detail

Summary

• ID
  rs3689949
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:56548068 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTGGTTTTA GATATAGCAC
  ACCTACAGAA TTACTAAATT CATTGTCTCA GTCCTAAAGC AGCCTTCTCT GTGCAGAGCT
  CTCACACCAG CTAAACCAGA CAGAGCTCAA TGCTAGCGTT ACATAATTCA GGAAAGAATG
  AGTTTGGGTC TGAGAGCAAA AGAAGCATAG ATTGTACTTG CTCTACCCCA CGTGCTCTGT
  S
  GAGAAATGCA ATACAGCAAG GAAACCAAGC CAAGGCAACC AAGCAAACAC AGTGGTCCTC
  TCTTCTTATA GTTGGAGCAG GTGTCATCAG ATGACATCTG AAAGCCAGGT CTACCCTTCT
  CTGTTGCTAG AAACCCTGCG AGTTAAAGGT GGATATTACA TTTTTAAATG GTTTGGCACA
  TTAAAAAAGT ATAAAGAACT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J
ss5066054	WI_WGS_6_56979470	WI	MOUSE	f	SNP	G		C
ss133228484	ENSMUSSNP3808020	ENSEMBL	ENSEMBL_Sanger	f	SNP		C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J
rs3689949					SNP	G	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:56548068 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi17476	CpG island 17476			1997 bp distal
Gm66600	predicted gene, 66600			1690 bp downstream
Pde1c	phosphodiesterase 1C			Intron
				Noncoding-Transcript-Variant
Rr631076	regulatory region 631076			1668 bp distal
Tssr1858	transcription start site region 1858			1902 bp upstream
Tssr61136	transcription start site region 61136			1961 bp upstream
Tssr61137	transcription start site region 61137			1880 bp upstream