rs3689912 SNP Detail

Summary

• ID
  rs3689912
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:56548042 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTCTCTCTC TCTCTCACTC
  TCTCTCCCTG GTTTTAGATA TAGCACACCT ACAGAATTAC TAAATTCATT GTCTCAGTCC
  TAAAGCAGCC TTCTCTGTGC AGAGCTCTCA CACCAGCTAA ACCAGACAGA GCTCAATGCT
  AGCGTTACAT AATTCAGGAA AGAATGAGTT TGGGTCTGAG AGCAAAAGAA GCATAGATTG
  Y
  ACTTGCTCTA CCCCACGTGC TCTGTCGAGA AATGCAATAC AGCAAGGAAA CCAAGCCAAG
  GCAACCAAGC AAACACAGTG GTCCTCTCTT CTTATAGTTG GAGCAGGTGT CATCAGATGA
  CATCTGAAAG CCAGGTCTAC CCTTCTCTGT TGCTAGAAAC CCTGCGAGTT AAAGGTGGAT
  ATTACATTTT TAAATGGTTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J
ss5066016	WI_WGS_6_56979444	WI	MOUSE	f	SNP	C			T
ss133228481	ENSMUSSNP1511811	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J
rs3689912					SNP	C	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:56548042 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi17476	CpG island 17476			1971 bp distal
Gm66600	predicted gene, 66600			1664 bp downstream
Pde1c	phosphodiesterase 1C			Intron
				Noncoding-Transcript-Variant
Rr631076	regulatory region 631076			1642 bp distal
Tssr1858	transcription start site region 1858			1876 bp upstream
Tssr61136	transcription start site region 61136			1935 bp upstream
Tssr61137	transcription start site region 61137			1854 bp upstream