rs3689908 SNP Detail

Summary

• ID
  rs3689908
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:56548038 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTTTCTCTC TCTCTCTCTC
  ACTCTCTCTC CCTGGTTTTA GATATAGCAC ACCTACAGAA TTACTAAATT CATTGTCTCA
  GTCCTAAAGC AGCCTTCTCT GTGCAGAGCT CTCACACCAG CTAAACCAGA CAGAGCTCAA
  TGCTAGCGTT ACATAATTCA GGAAAGAATG AGTTTGGGTC TGAGAGCAAA AGAAGCATAG
  R
  TTGTACTTGC TCTACCCCAC GTGCTCTGTC GAGAAATGCA ATACAGCAAG GAAACCAAGC
  CAAGGCAACC AAGCAAACAC AGTGGTCCTC TCTTCTTATA GTTGGAGCAG GTGTCATCAG
  ATGACATCTG AAAGCCAGGT CTACCCTTCT CTGTTGCTAG AAACCCTGCG AGTTAAAGGT
  GGATATTACA TTTTTAAATG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J
ss5066012	WI_WGS_6_56979440	WI	MOUSE	f	SNP	G			A
ss133228478	ENSMUSSNP3895858	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J
rs3689908					SNP	G	G	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:56548038 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm66600	predicted gene, 66600			1660 bp downstream
Pde1c	phosphodiesterase 1C			Intron
				Noncoding-Transcript-Variant
Rr631076	regulatory region 631076			1638 bp distal
Tssr1858	transcription start site region 1858			1872 bp upstream
Tssr61136	transcription start site region 61136			1931 bp upstream
Tssr61137	transcription start site region 61137			1850 bp upstream