rs3689588 SNP Detail

Summary

• ID
  rs3689588
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:104622475 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATGAA CTGGGACAGG GAACCCTGCC
  R
  ACTCCACAGT GCCACCTACA GGCTG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	MOLF/EiJ	PWD/PhJ	WSB/EiJ
ss5065689	WI_WGS_3_104824060	WI	MOUSE	f	SNP	G						A
ss46832503	NES10722242	PERLEGEN	MM_PANEL2	f	SNP	G	G	A	A	G	G		A	A	A	G
ss135570500	ENSMUSSNP814038	ENSEMBL	ENSEMBL_Sanger	f	SNP		G						A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	MOLF/EiJ	PWD/PhJ	WSB/EiJ
rs3689588					SNP	G	G	A	A	G	G	A	A	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46832503	NES10722242	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:104622475 () rs orientation: forward

Symbol	Name	Function Class
Gm64989	predicted gene, 64989	within coordinates
Rr397915	regulatory region 397915	641 bp downstream
Rr582584	regulatory region 582584	782 bp distal
Rr582585	regulatory region 582585	798 bp distal
Rr582586	regulatory region 582586	within coordinates
Rr582587	regulatory region 582587	487 bp distal
Rr582588	regulatory region 582588	6 bp proximal