rs36893998 SNP Detail

Summary

• ID
  rs36893998
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:65897881 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACCCTAGCA CTCAGGAGGC
  AAAGGCAGGA GGATCTTTGT GAGTAGAGAC CAACCTGATC TACTTAGTGA ATTCCAGGAT
  ATATATATCT ACTATGTAGA TATATATTAC TATGTAGAAA GACCCTATCT CAAATGAAAA
  TCAAAACAAA AGAAAAACAA ACAAACAAAC AAACAAACAA AAACACAAAA TTTAAAAAAC
  K
  AATGAATCTA TCACTAACAC ACATCTATAA TTTCTAAGAG GATCATAATA TCCATTGTAA
  GGTTGTAGCA ACAAGCAGAA TTTGCAGCTG CCTTTTGTTC CGTTCCGTTC CTCCCTGGCA
  ATCCCTCTGT CAACAGCCTC CTTTCATCCT TATAGAACTG TGAGTACTGT GCCTCACTGA
  GTAGCTCCAC TAGTCTCCTC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss51540089	NES14688913	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	G	T	T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs36893998					SNP	T	T	T	T	T	T	T	T	T	G	T	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51540089	NES14688913	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:65897881 () rs orientation: forward

Symbol	Name	Function Class
Gm19024	predicted gene, 19024	968 bp upstream
Rr577779	regulatory region 577779	592 bp proximal
Rr577780	regulatory region 577780	715 bp proximal