rs36893685 SNP Detail

Summary

• ID
  rs36893685
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:34074120 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTATCCAAGC AACCTTGTAA
  TCTTTAATTT GGTCCCCTGG GTGGAACTGG CCCCTGTGCG GGCTGTATCT TACGTGAGAA
  CATGCTGCCC TGCTCCCTGA ACCTGCCCCA TCTCCCATTG TAAATTAATA AATTGGTGTG
  CTGGCTTTTA CATCAGTCCC TTGTGGGTTT GGATAAACAG TGATTAGTCC CCTGGGTAAC
  S
  GAGAGATGTG TGTTTCTGTG TGGTGCTGCT GAACTAAGGA GCGATGAGCA AGACTTGGCA
  CAGTGGCCTG CAGGCTCCAT CACTCTATTC TGTGCCTCTT CCTGTTCCTA CAGTGATCAG
  GACCCCGACT ATAGCGTGCA GTGACTACCT AGCAAATTAA CAGGCAAAAT AATGTGTGCA
  CAGGAAAGTA GACTGCCACT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51591528	NES14851670	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	G	C	C	C	G	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36893685					SNP	C	C	C	C	C	C	G	C	C	C	G	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51591528	NES14851670	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:34074120 () rs orientation: forward

Symbol	Name	Function Class
Lrguk	leucine-rich repeats and guanylate kinase domain containing	Intron
Rr628246	regulatory region 628246	553 bp distal