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rs36893685 SNP Detail
Summary
  • ID
    rs36893685
  • Variation Type
    SNP
  • Alleles
    C/G
Genome Location and Flanking Sequence
  • Location
    Chr6:34074120 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                CTATCCAAGC AACCTTGTAA
    TCTTTAATTT GGTCCCCTGG GTGGAACTGG CCCCTGTGCG GGCTGTATCT TACGTGAGAA
    CATGCTGCCC TGCTCCCTGA ACCTGCCCCA TCTCCCATTG TAAATTAATA AATTGGTGTG
    CTGGCTTTTA CATCAGTCCC TTGTGGGTTT GGATAAACAG TGATTAGTCC CCTGGGTAAC
    S
    GAGAGATGTG TGTTTCTGTG TGGTGCTGCT GAACTAAGGA GCGATGAGCA AGACTTGGCA
    CAGTGGCCTG CAGGCTCCAT CACTCTATTC TGTGCCTCTT CCTGTTCCTA CAGTGATCAG
    GACCCCGACT ATAGCGTGCA GTGACTACCT AGCAAATTAA CAGGCAAAAT AATGTGTGCA
    CAGGAAAGTA GACTGCCACT                                            
    
    S = C/G
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
ss51591528 NES14851670 PERLEGEN MM_PANEL2 f SNP C C C C C C G C C C G C C C C
SNP Consensus Information
SNP Consensus Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
rs36893685 SNP C C C C C C G C C C G C C C C
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss51591528 NES14851670 PERLEGEN MM_PANEL f SNP C/G
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr6:34074120 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Lrguk leucine-rich repeats and guanylate kinase domain containing Intron
Rr628246 regulatory region 628246 553 bp distal

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
03/18/2025
MGI 6.24
The Jackson Laboratory