rs36892447 SNP Detail

Summary

• ID
  rs36892447
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:86769812 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAATGATGG GCAGAGGGAT
  AGGTAACAAC CGGCCATCCT ATCCATCCTT CCACCATCCA CTAAAGTGCC CAGTTTTAAT
  GAAAGGCGCA GTTGCTTAAG GCCCAGAGTG CTCCTCCAGT AAATGGAGGC TTTCATACCC
  TTGAGGTGCA CATTGAGCCA GCAAAGTGTT AAACCGCCAA TTGTCTTAGG CGCCAAAGTC
  K
  CCAACTGGTC AAAGCACCGA GGACTAAGTT AAAATGTAGA CACAGGCAGA CACAGAATAA
  AAACTAAGAA TAAGATGATT CCTGGGCGCC AGGCACTGTG TGGAGACCGT TCGCTACAAG
  AGAGGCGAGG AGCGCCCTAA GAAGACGAGA AAGCAAACTT ACTTGCAAAA AGAAAAGGCA
  ACACAAGTAG TGCTGGAGTG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51749452	NES14799906	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	G	T	T	G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36892447					SNP	T	T	T	T	T	T	T	T	T	T	G	T	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51749452	NES14799906	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:86769812 () rs orientation: forward

Symbol	Name	Function Class
Anxa4	annexin A4	Intron
Cpgi17670	CpG island 17670	102 bp proximal
Rr633514	regulatory region 633514	1988 bp distal
Rr633515	regulatory region 633515	within coordinates
Rr633516	regulatory region 633516	744 bp proximal
Tssr61864	transcription start site region 61864	692 bp downstream
Tssr61865	transcription start site region 61865	760 bp downstream