rs36891676 SNP Detail

Summary

• ID
  rs36891676
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:101957344 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACTTTTGTT CATGCATGCG
  GCTGTAATGA ATATTGATTT TGGTGATGGC ACTGAGCGAG TCTGAGGAAT TTCACACTTA
  ATGTCTCAGT CTAGATGAGA CAGGTGGTAT CCCTTCCATT CTCAGGGAAC TGGCAGCCAC
  ACCACAGGCT CTTGGGTGGA TCGTCCCAGG AGAAAGCCTT TCCATATTCC TCAGTATTTG
  Y
  CACCAGCTGC TTGAGGATCC AAAGTGGAGG ACAAGATGGG GGTGTGGTTT CCAGGATGTG
  CCCTGGGGTC AAATTGCTTG AGTTCACAAT TTTTCTGTTG TGTAGCACTG AAATTTTCCA
  CTGTGTGCCT CAGTTTCTTA TACATAGAAT GGGCAGTAGT TGTGGCAGTA CATCTAGTGC
  ACTCAGTATA GTGGTTGACA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss51588887	NES14670361	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C		C	T	T	C		C
ss320854071	CHEV_3_101853951	CHEVERUD	SCREENING_POP	f	SNP											T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs36891676					SNP	C	C	C	C	C	C	C	C	C	C	T	C	T	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51588887	NES14670361	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:101957344 () rs orientation: forward

Symbol	Name	Function Class
Rr375477	regulatory region 375477	within coordinates
Rr407227	regulatory region 407227	within coordinates
Rr582166	regulatory region 582166	within coordinates