rs3689162 SNP Detail

Summary

• ID
  rs3689162
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:130133622 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAATGGCAAG GAAGACAGAG
  AGCTGAAATA TAACCTCCGG GCGACTTTCT GAGACGGCCC TTCTCTGCAC TTCCTGGGAG
  GATGCGAGGA GCCATAATTT TCTAATCATC AGGTGACTTA GGAAGCGAAT CCAAACAGCA
  ACCTAACACT CTGGGGACTC CAGGGGGCAC TCTAGTACAG TACACAGACT GTCCACTAGG
  Y
  GCTTAAAACA CAGACTGTCT GCTTCTCACG GGTTTTCACT GGGCTGGGGC ATGGGGAAAA
  TCCGCTCTTC TGTTTAAACA GTACAATCTC AAGACCAGAC TTACCAGAAG AAGAAGAAGA
  AAAAACAAAA AAAAACAAAA AAACCAACCC TCAGCTCATC AGCATGGTGA GGGAGGCACC
  ATCATGACAC CCCAGGTGCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BALB/cByJ	C57BL/6J
ss5065258	WI_WGS_2_131288646	WI	MOUSE	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	BALB/cByJ	C57BL/6J
rs3689162					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:130133622 () rs orientation: forward

Symbol	Name	Function Class
Gm74723	predicted gene, 74723	within coordinates
Gm74727	predicted gene, 74727	within coordinates
Rr373864	regulatory region 373864	1801 bp downstream
Rr565032	regulatory region 565032	within coordinates
Rr565033	regulatory region 565033	27 bp distal
Rr565034	regulatory region 565034	1593 bp proximal
Rr565035	regulatory region 565035	1850 bp proximal
Tssr652	transcription start site region 652	602 bp upstream