rs36890123 SNP Detail

Summary

• ID
  rs36890123
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr5:118010051 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGATGACCAA GACCTGTGAC
  CTTTCAAGAT GAGAAGGAGG TCCAGCACAA GTTATGGAAG AATCTAACTC TGTCTGGTGG
  GTCCTGTGAG CTTCCCAGTC CTCTCTCCAT CATCATGGAA GAGCCAGGAT TCCAGGTCCA
  CTCTCCCTGT AGCAGGGCAA GCTGGCCAGC CTGGGTCTGC ACAACTAATT AGCATTTGCA
  Y
  ATCCTAAAGA TGGCCAAGAG GGAGTTGGAG CCACAGCTCT GTAACATGAG GACCTGAGGT
  CAGATCTCAG GCTCCCACAA GTCCTAAGGA GATGGAGCTA ACCAGCTGCC CGGGTAGTTA
  GTTGGCTCAT CAATCAGCCC TGCTTAATTG GAGAATTCCA CAACAGGGAG AGACCCCGTC
  TCGACAAATT GGCCTTTGAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51190937	NES13826008	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T		C	C	T	C
ss149158655	ENSMUSSNP3289136	ENSEMBL	ENSEMBL_Sanger	f	SNP		C						C				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36890123					SNP	C	C	C	C	C	C	C	C	C	C	T	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51190937	NES13826008	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:118010051 () rs orientation: forward

Symbol	Name	Function Class
Gm30360	predicted gene, 30360	within coordinates
Gm37028	predicted gene, 37028	827 bp upstream
Nos1	nitric oxide synthase 1, neuronal	Intron
Rr618744	regulatory region 618744	1886 bp proximal