rs36889347 SNP Detail

Summary

• ID
  rs36889347
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:34423434 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCACTCTAC CAAGGCCACA
  CCTCCTAATA GTGCCACTTC CTGTGGGCCA AGCATACAAA CACACGAGTT TACGGGGCCC
  ATTCCTGTTC AAACCACCAC AACCATCTGA TGATTGTGAA TAGTTAGCCA TGTGTACAAG
  TAAAATTGGA TGCATCGTAG AAGGGACGTG CTCAGTGAGT GAAGCCTGAC ATAATACAAG
  S
  TTGTCAACCA AAACAGAGCA CCACAACAGT CTTCCCCTTA GCAACAAACT CCCTTTCTAT
  TGACTCCCAT AAAAGGAAGC ACAAACATTA CCATGGGGCC ATCAGCACTT TCGCATGCTC
  ATTACTCTTG ACAGCACAAT TCCTCATAAG CACTATACTT TCCCAATCAC TAAAGTTATC
  TTGCTACTTT TACAATATGT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss51273541	NES13780819	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	C	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs36889347					SNP	G	G	G	G	G	G	G	C	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51273541	NES13780819	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:34423434 () rs orientation: forward

Symbol	Name	Function Class
Gm68356	predicted gene, 68356	940 bp upstream
Rr628311	regulatory region 628311	1556 bp proximal
Rr628312	regulatory region 628312	1664 bp proximal