rs36888332 SNP Detail

Summary

• ID
  rs36888332
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:15187556 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGATTACGG TATAGGAGGG
  TTACAGGTAT CTGTTTAGAA ATGTGGGCTT AGTTTCAAAA CAAGTTGTTT GGGTTTTCTT
  TTTTTCCCAA CCATTGTATA ATTCTCAAAA TATGCCCATG CCTTATTTTA AAGATCACTA
  AAATTATATG CATTGGAATA ACTAATACTC TTTGTAAAAG GTGGGCAGAT AATGTGTTTA
  Y
  TTTATTATTC ATGAAGGCAA GTAAAGCAGG GTATTCTGCT ATTGTGGGCA TATTATTAAC
  ATTTCATAGG GATTTGTGCT GGAATGTGGA ATGCTGCTTC TTCATAATTT AATACTCCTA
  TGCATAATGA GGTTTGTGAT TAGTTGATAG AGAGAATTGG CCCAACTCCA TTCTGAAAGC
  AGATAATTTA CATTGTTCTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss51242609	NES13801225	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs36888332					SNP	C	C	C	C	C	C	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51242609	NES13801225	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:15187556 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Foxp2	forkhead box P2			Intron
				Noncoding-Transcript-Variant
Rr406279	regulatory region 406279			within coordinates
Rr626649	regulatory region 626649			1150 bp distal
Rr626650	regulatory region 626650			187 bp distal
Rr626651	regulatory region 626651			383 bp proximal
Tssr54982	transcription start site region 54982			1962 bp downstream
Tssr54983	transcription start site region 54983			1931 bp downstream
Tssr54984	transcription start site region 54984			1902 bp downstream
Tssr54985	transcription start site region 54985			1892 bp downstream
Tssr54986	transcription start site region 54986			1698 bp downstream
Tssr54987	transcription start site region 54987			713 bp downstream
Tssr54988	transcription start site region 54988			661 bp downstream
Tssr54989	transcription start site region 54989			644 bp downstream