rs36887916 SNP Detail

Summary

• ID
  rs36887916
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr10:8638836 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGTTCTCGG GCATTCTGGA
  ACAGCAAGCC TGGGGACTAT GTCACATGAT TGTTTAATCT TGGGGAGTCC CAGGGGAGCA
  CCAGGCACAT GCTGTTACTG AAACAGGACA TAGGCTAAAC AAGACAGAGC TGAAAAATGG
  AAGAAAGAAG TCTCCATGAC GTGTCCCTTC CCGTGGCTCA CCTCACTGAG TTAACCCACC
  K
  TGCGGTTTGC CCTAATCACA GCGCGCTGCC TCTTCCACCG TGAGGGCCTT CCTTATCCAT
  CTCTTTAGAG GCGGATACAG ATACACAACA CACATAAAAC ACCTGGCAGC CAGAGCTCAC
  CGTGAGTGCC AATCTCTGTC TCCTTAAAAT AGCAGAAGGA CTTTTGGGAG GAGGTCTAGG
  GCTTACTTAA ACGGGGGTAA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50810548	NES14204860	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	T	G	G	G	T	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36887916					SNP	G	G	G	G	G	G	T	G	G	G	T	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50810548	NES14204860	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:8638836 () rs orientation: forward

Symbol	Name	Function Class
Rr384117	regulatory region 384117	53 bp downstream
Rr427375	regulatory region 427375	1622 bp distal
Rr427376	regulatory region 427376	within coordinates
Rr427377	regulatory region 427377	432 bp proximal
Sash1	SAM and SH3 domain containing 1	Intron
Tssr3133	transcription start site region 3133	676 bp upstream
Tssr96640	transcription start site region 96640	813 bp upstream
Tssr96641	transcription start site region 96641	789 bp upstream
Tssr96642	transcription start site region 96642	758 bp upstream
Tssr96643	transcription start site region 96643	702 bp upstream
Tssr96644	transcription start site region 96644	606 bp upstream
Tssr96645	transcription start site region 96645	456 bp upstream