rs3688707 SNP Detail

Summary

• ID
  rs3688707
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:25707714 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AAAATACCTG CACAGGCTAC TCCCATGTTC TTCAAAAGAA
  TTTCTGTTAT AAAGAGTATG GAAAAGAAAA GGAAACTGCA CAATGCTTGA GGCGATGATT
  R
  CTTATTTTAT TTTGTTTATT TATTTTTAAA GATTTATTTA CTTTTTTATG TATGACTGCA
  CTGTTGCTGT CTTCGGACAC ACCAGAAGAG GGCATCAGA                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C57BL/6J	DBA/2J	LG/J	NOD/ShiLtJ	SM/J	WSB/EiJ
ss5064798	WI_WGS_6_25664515	WI	MOUSE	f	SNP					G	A
ss45959060	mCV24703025	ABI	CRAMUS_MOUSE	f	SNP		A	G			A	G
ss60873606	NES15976015	PERLEGEN	MM_PANEL2	f	SNP	A		G	G					G		A
ss133082517	ENSMUSSNP6934767	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G				G
ss321771367	CHEV_6_25657715	CHEVERUD	SCREENING_POP	f	SNP								G		A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C57BL/6J	DBA/2J	LG/J	NOD/ShiLtJ	SM/J	WSB/EiJ
rs3688707					SNP	A	A	G	G	G	A	G	G	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60873606	NES15976015	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:25707714 () rs orientation: forward

Symbol	Name	Function Class
Rr627304	regulatory region 627304	78 bp proximal
Rr627305	regulatory region 627305	1709 bp proximal