rs36885484 SNP Detail

Summary

• ID
  rs36885484
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:78875507 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATACCAGGAG AAGAACTAGA
  TCTTAGCTTC TTCTAACAAT GTGTCATACT ACAAAGTGAA TTTCAAATGG TTAGTCATTC
  AAAAGGGGGT GGTAAAAAGT GAAATATCAA ATAAGAAGTC ACCTAAAACA AACTTCAAAC
  TTGTTACTTT GCTTGTGGAT TGTCTCCAGA TCATGGAGAA GTATTCCACA CATTGACAAA
  Y
  CACTTGTCGC TACTGTCTAC AAATCTCAAA TATTAATTGA AAGTTTCTTC AAATCAACCA
  GGGTCTGATA TTTAGAGTTT CCTCCTGGGC ATATTTCTAT GCTTTTTGAT GTTTGGAGTG
  GGGTTCTTGT TAAGATGATG TAATATTGGT ATTCTGTGAA GTTCAAGGAT CTATACCATA
  ACTCAAAGCA CATTTTGCCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss51711178	NES14810565	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	C		T	C		T
ss321832855	CHEV_6_78848518	CHEVERUD	SCREENING_POP	f	SNP											C			T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs36885484					SNP	T	T	T	T	T	T	T	T	T	C	C	T	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51711178	NES14810565	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:78875507 () rs orientation: forward

Symbol	Name	Function Class
Rr632520	regulatory region 632520	1528 bp proximal
Rr632521	regulatory region 632521	1611 bp proximal