rs3688129 SNP Detail

Summary

• ID
  rs3688129
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:141455119 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTAAGCTTAG GTCTCAACGG
  CAACTCGTAT TTAACCTGGT TCTCTTAGAC AGTTCACTCT TGGGATCCAG CGAGGAAGCC
  CACATTCTCT CTCCAAGTAA GAAAACTATG GAGAAGAAAG ACACATAGCT ACTCCAGGCA
  ACGGCTTAGC CGAGGGCAAA GCTGCTCACC GGGCAAACCT AGCATGTGTC TGAGCTTAGA
  R
  CTTCCGGGTG AACGCAGCCC TAGCCACTGA GTCAGGGGAA AGAAAGCCTT TGACACTTTC
  CAGTTGAGGC TCCAGAGAAC CATATGCTCT TCTTTCCTGT CTGAATTTCT GGCTCACAGA
  ATCTGTGACC ATCATACAAT GCCGTTGAGA ATTAAAACCC CAAACAGGGA CCACTCGCTA
  CGGGGGCTGT GGTGGCTGAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	C57BL/6J
ss5064216	WI_WGS_4_139469542	WI	MOUSE	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	C57BL/6J
rs3688129					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:141455119 () rs orientation: forward

Symbol	Name	Function Class
Gm34863	predicted gene, 34863	1695 bp upstream
Rr603866	regulatory region 603866	1662 bp distal
Rr603867	regulatory region 603867	1260 bp proximal
Rr603868	regulatory region 603868	1744 bp proximal