rs3688061 SNP Detail

Summary

• ID
  rs3688061
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:141455089 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGGACACTG TATGATGGCT
  TCGATGGCTT CTAAGCTTAG GTCTCAACGG CAACTCGTAT TTAACCTGGT TCTCTTAGAC
  AGTTCACTCT TGGGATCCAG CGAGGAAGCC CACATTCTCT CTCCAAGTAA GAAAACTATG
  GAGAAGAAAG ACACATAGCT ACTCCAGGCA ACGGCTTAGC CGAGGGCAAA GCTGCTCACC
  R
  GGCAAACCTA GCATGTGTCT GAGCTTAGAG CTTCCGGGTG AACGCAGCCC TAGCCACTGA
  GTCAGGGGAA AGAAAGCCTT TGACACTTTC CAGTTGAGGC TCCAGAGAAC CATATGCTCT
  TCTTTCCTGT CTGAATTTCT GGCTCACAGA ATCTGTGACC ATCATACAAT GCCGTTGAGA
  ATTAAAACCC CAAACAGGGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	C57BL/6J	LG/J	SM/J
ss5064147	WI_WGS_4_139469512	WI	MOUSE	f	SNP	A	G
ss321389321	CHEV_4_141283693	CHEVERUD	SCREENING_POP	f	SNP			A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	C57BL/6J	LG/J	SM/J
rs3688061					SNP	A	G	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:141455089 () rs orientation: forward

Symbol	Name	Function Class
Gm34863	predicted gene, 34863	1725 bp upstream
Rr603866	regulatory region 603866	1632 bp distal
Rr603867	regulatory region 603867	1290 bp proximal
Rr603868	regulatory region 603868	1774 bp proximal