rs3688028 SNP Detail

Summary

• ID
  rs3688028
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:101127161 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCCTTAATG GAGCTATGAA
  TTATCTTTGT TTACTAGGAT TAAGACATGA TCTCATCTCA GTGATTTAGA ATAGCAATTG
  TCAATATGGG TCTACTCCCA CTGATGTCTT AGTATAAAAC CCTAAGATAA CCAAATTCAG
  GCCAAGGGCT GTAAGTGAAG CAAGATGCCC AGCATGTGTG GAAATACTTT ATTATTTCCA
  Y
  CCAGGCTTAT GTTCTGTGGG TGCTCCCTAG AACTGACAGT GCCCTCACGC CCAAAGAAGT
  CTCTTAAAAA CACCCCAGCC CTCAGGTTTT GTGTTTTCAC TTTTGAAAGA TATAAGGCAC
  AAGTCTTGAT GAAATTGTGA GTTTAGACAC AACTTTGTGA TTTTTCTTAA AGATTTATTT
  TAATTATGTG TATATATGTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	BALB/cByJ	C57BL/6J	DBA/2J	LG/J	SM/J
ss5064112	WI_WGS_3_101331102	WI	MOUSE	f	SNP			T	C
ss135545479	ENSMUSSNP6636206	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T			C
ss320851479	CHEV_3_101023768	CHEVERUD	SCREENING_POP	f	SNP						C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	BALB/cByJ	C57BL/6J	DBA/2J	LG/J	SM/J
rs3688028					SNP	C	T	T	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:101127161 () rs orientation: forward

Symbol	Name	Function Class
Gm65590	predicted gene, 65590	within coordinates
Rr581978	regulatory region 581978	232 bp proximal