rs36879422 SNP Detail

Summary

• ID
  rs36879422
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:117862269 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGAGCACCC TTTTGTAAAT
  CATCATCTCA CACATACTTA TTATCTTCCA GCTCAGTGCA CAATACTATC TGTTACACAT
  GGATGCCAGC AATAATACAC AGGGGGCTCT GGCATGAGAT ACTGGGAGGT TGGTGCTCAT
  CTGCCTTCTG AGCCTCATTC TGCCACAAGG AGTTCCTGGG TATATGGAAG CCACTGTGTC
  Y
  AAGAATTAAA GGCACATGGC TCTATTATTT CTACTGAAAA ATATAGGTAA TGCGACATGA
  GCCTTCCAAT ACCACATAGA CCCAGAGAGT GTTTGACTAC CACACAGCAG CAGGAGTTTG
  AGATTAGTTT TATTTGGTTT TTGCTTTGAG AGGGAATACT TCCATATGAC TGTTGTATTA
  CAAGATCCTT GTATATACAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss51597236	NES14669709	PERLEGEN	MM_PANEL2	f	SNP	C		T	T	T	T	T	C	T	T	T		C	C	C	C		T
ss135695956	ENSMUSSNP5490072	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T						T
ss320900835	CHEV_3_117771538	CHEVERUD	SCREENING_POP	f	SNP												T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs36879422					SNP	C	C	T	T	T	T	T	C	T	T	T	T	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51597236	NES14669709	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:117862269 () rs orientation: forward

Symbol	Name	Function Class
Gm65635	predicted gene, 65635	within coordinates
Rr583881	regulatory region 583881	1538 bp proximal
Rr583882	regulatory region 583882	1812 bp proximal