rs3687875 SNP Detail

Summary

• ID
  rs3687875
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:127084035 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTGGA ACTCACTTTG TAGATGTTTT
  R
  TGTCCCTCAC TGAAAACCTC CTCTT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss5063957	WI_WGS_2_128222643	WI	MOUSE	f	SNP	A							G
ss37629942	NES09011540	PERLEGEN	MM_PANEL2	f	SNP	A		G	A	G	A	A		A	A	A	A	A	A	A	A
ss45238865	mCV22836302	ABI	CRAMUS_MOUSE	f	SNP			G							A
ss147524283	ENSMUSSNP3492015	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G							A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs3687875					SNP	A	A	G	A	G	A	A	G	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37629942	NES09011540	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:127084035 () rs orientation: forward

Symbol	Name	Function Class
Ciao1	cytosolic iron-sulfur protein assembly 1	mRNA-UTR
Rr564475	regulatory region 564475	1698 bp distal
Rr564476	regulatory region 564476	1287 bp proximal
Snrnp200	small nuclear ribonucleoprotein 200 (U5)	1664 bp downstream