rs36878683 SNP Detail

Summary

• ID
  rs36878683
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:101467987 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTACTGTCCA TGCAAAACAC
  CCTTCAGAGC ATCATCCCCT TGGGCTCAAT AGACAGAACT GGAAGGAAAG GAAAGCTGGA
  AATGGTGTGT GTGTGTGTGT GTGTGTGTGT GTGTGTGTGT GAGAGAGAGA GAGAGAGAGA
  GAGAGAGAGA GAGAATTAGT ACAGGGATGC ATTACTATGG TAGCTGGGGT TAAACTACAT
  Y
  ATTTTCTCTC CCTTCTCTGC TCTTGGTGAC TGGGCATCAG CAGCTTACTT GTGGGCCTCA
  CTGTTTGTAA AGTGGAATTA ACAGATGCGC TGTAAATACG AAGAGAGAAA TAAACATACA
  GAATTGAGCA TTTATCCAGG ACTTGGGCAA TGGCATCCAT TCCACCTTTC CCACAATAAT
  ACGTAGGTTG CCCTGCAGTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51584039	NES14669509	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36878683					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51584039	NES14669509	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:101467987 () rs orientation: forward

Symbol	Name	Function Class
Rr582081	regulatory region 582081	94 bp proximal
Rr582082	regulatory region 582082	1912 bp proximal