rs36876835 SNP Detail

Summary

• ID
  rs36876835
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:84344227 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTATAGCAAA GTCTAGGGGT
  TTGCTTTGGC CTACATTTGG TCCTGCCTCT ACCCTGCTTC TTTTGGAATG AGAACTGCTA
  TCCACCAGGG TTTGTCAAAA CACCCAGGGA CATCTGAAGT GCTGAGGAGG CAAGGATTGT
  GTAGGCAACC CAGGGCCAGA GAGTGGGCTT CACAGAAGGA GCCTAGAGAG AGTCACATGT
  Y
  CTTGTAGTCT GACTTCTCTT CACTCCCCAT CATTCCCTCC CAGATCCTTG CATCCCACTT
  TCCACCCTTA GGGTCTTTGA TGCTTCACTA GCCTCTCTCT GCCTGCCCCA GTGTGTGTGT
  GTGTGTGTGT GTGTGTGTGT GTGTGTGTGT GTGTGTGTGT GTGTGTGTGT GTGTTTACTT
  ATATGTGGCT ATGCACATGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss51734110	NES14803904	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs36876835					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51734110	NES14803904	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:84344227 () rs orientation: forward

Symbol	Name	Function Class
Rr633039	regulatory region 633039	1976 bp distal