rs36875892 SNP Detail

Summary

• ID
  rs36875892
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:113052322 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACATCAGGTA ATATTGGGGG
  AGGAGACATC CACCTGGAAA CCATTAATGG TTAATAGCTC AGTTTATAAA TGGAGAAAAA
  GGAGAGAGGC ATTCATGGGA GTGGAAAGTT AAGCTTTAGG TTGGATTCTC AATACATCTA
  TTGTTGTAAA ACTCCCTGGA CTGAGAATAG GCCCAAATGT GGAACACCAC CTGACGGGAG
  W
  GGTGATAGAC ACTGAAAATT AAGGATCAAG GCAAAGGATC AACAAAAAGT GTACTAAGGA
  GTTATAAAAG AACTGCAGTG TTGAGGCCCC AGCTACAGCC TCGATTTGTG GTGTATGTAA
  CTAATCTGTC TGGTTTCATG AGTCATCAGA CTTCTAAGAT CAGGAAAGGG AAAATGCCAA
  TGCTCTGTCT AGGGGTTGGA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51843818	NES14766053	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	T	A	A	A	T	A	A	T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36875892					SNP	A	A	A	A	A	A	T	A	A	A	T	A	A	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51843818	NES14766053	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:113052322 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17829	CpG island 17829	700 bp proximal
Gt(ROSA)26Sor	gene trap ROSA 26, Philippe Soriano	within coordinates
Rr379953	regulatory region 379953	32 bp upstream
Rr407325	regulatory region 407325	456 bp proximal
Rr636448	regulatory region 636448	719 bp distal
Rr636449	regulatory region 636449	within coordinates
Rr636450	regulatory region 636450	1027 bp proximal
Rr636451	regulatory region 636451	1941 bp proximal
Rr636452	regulatory region 636452	1953 bp proximal
Tssr58166	transcription start site region 58166	1993 bp upstream
Tssr62428	transcription start site region 62428	956 bp downstream
Tssr62429	transcription start site region 62429	1820 bp downstream
Tssr62430	transcription start site region 62430	1876 bp downstream