rs36873632 SNP Detail

Summary

• ID
  rs36873632
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  126
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:100688245 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GACCAGTAAG ATCCCTCTCA GCTAGGGTCC AACTGCGTTA
  ATGAAGTCAC ACTGAGATAT TATTATTATT AATGTTCATT TAGATTCCCT ATTCCAGGAT
  R
  TGGTGGTTCA AAAAAGAAAA AAAAAAAAAA GTCCCCCGTT GGCCCATAAG GAGTGGCACT
  ATTAGGAGAT TTGGCTTTCC TGGAGGAGGT GCCTGACGAG                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss51794095	NES14788258	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	A	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs36873632					SNP	G	G	G	G	G	G	A	G	G	G	A	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51794095	NES14788258	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:100688245 () rs orientation: forward

Symbol	Name	Function Class
Gxylt2	glucoside xylosyltransferase 2	Intron
Rr635699	regulatory region 635699	1347 bp distal
Rr635700	regulatory region 635700	852 bp distal
Rr635701	regulatory region 635701	929 bp distal