rs3687123 SNP Detail

Summary

• ID
  rs3687123
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:135898644 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGCTACCTG GTTTGTGATG
  ATCTGATCAG GTCTTAACAC GGGGACTCAG CCCACCCCCC CTCCTGTTGT GGTAAAATAA
  TTGTTTAGGC CGGTCAATGG TGGCGCACGC CTTTAACCCC AGTGCTTGGA AGGCAGAGGC
  AGGTGGATTT CTGAGTTTGA GGCCAGCCTG GTCTACAAAG TGAGTTCCAG GACAGCCAGG
  R
  CTACACCGAG AAACCCTGTC TCACAAAAAC AAAAACAAAA ACAAAAACAA ACAAACAAAA
  ATTTGTGTAG AAGAAACCTG GAGGTGTTTG ATTCAGGAAG GAAGAGTGCT GGGTCCTGTT
  GGGGAAAATG ACCTGACAAA CTCTGGACCC TCACCCACGC TGTGCCTGTC AAGGGCGGGG
  CAGAGTTTGG GAGAGTGGAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	C57BL/6J	DBA/2J
ss5063196	WI_WGS_4_133759638	WI	MOUSE	f	SNP	A		G
ss45588355	mCV22914073	ABI	CRAMUS_MOUSE	f	SNP		A	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	C57BL/6J	DBA/2J
rs3687123					SNP	A	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:135898644 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15100	CpG island 15100	620 bp proximal
E2f2	E2F transcription factor 2	1061 bp upstream
Rr367754	regulatory region 367754	735 bp upstream
Rr602302	regulatory region 602302	571 bp proximal
Tssr39670	transcription start site region 39670	933 bp upstream
Tssr39671	transcription start site region 39671	1034 bp upstream
Tssr39672	transcription start site region 39672	1063 bp upstream
Tssr39673	transcription start site region 39673	1095 bp upstream
Tssr39674	transcription start site region 39674	1225 bp upstream
Tssr39675	transcription start site region 39675	1333 bp upstream
Tssr39676	transcription start site region 39676	1517 bp upstream
Tssr39677	transcription start site region 39677	1612 bp upstream
Tssr39678	transcription start site region 39678	1834 bp upstream
Tssr44029	transcription start site region 44029	985 bp downstream
Tssr44030	transcription start site region 44030	1268 bp downstream
Tssr44031	transcription start site region 44031	1705 bp downstream