rs36869459 SNP Detail

Summary

• ID
  rs36869459
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:42146819 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCCGCAGCC TGCTTTCTCA
  GTCCCTCCTG CCTCTCACAG GCTCCTCACA ACCTCTTCTG TGGCTCCTGG GCATTTAATA
  TAACTGACTC TCTTTCAGTC AGGTCAACCC AATTTCCTGA GGCCCAGAAC GCCATCACTC
  AGCCAATGGG GCTAATGCTC ATGCCTCCTT CACTGGATGT AGAAAGAGCA TCATGAGATG
  Y
  TGACCAGGCC ATAGATAGGA GGGCCTGGCA ATCAAATCTA TACAGCTCTG CCTGAGGCAG
  CATGGCTGCC CTCTGCAGGA TTTCATAAGA CCATGTACAA TCAAAGCAGA GCCCGTACCA
  TGCCCGATAG TCTGTAGTGA TGAGGAATAT AAATTTCCTT CTGCCCAAGG CTCCATGCCT
  TTTCCCCAGC TGAGAGAGGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50819745	NES13534963	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36869459					SNP	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50819745	NES13534963	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:42146819 () rs orientation: forward

Symbol	Name	Function Class
Gm6937	predicted pseudogene 6937	1289 bp upstream
Rr547837	regulatory region 547837	265 bp distal
Tssr156487	transcription start site region 156487	1248 bp upstream