rs36866672 SNP Detail

Summary

• ID
  rs36866672
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:145408271 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATCATGTAT ATCATGAAAA
  TATACAAGCC TACGAAAGCC ATCTTCATTC AAACCACCAC AGGAGGGATC CAGGAAAAAG
  AGGAGAGTTG CGATAAACAC GTCCAAGATA CACATGTATT AAATTTTCAA ATAATAAATA
  AAAGTATTAC TTTAACAAGA CAGAAACATA AGAAAACTAG AATCCTTTCA GCAGCATTTC
  Y
  GCGTTTCCTG AGTCGTTTCA ATTACACGTC CACATTTATG CCCTCTAACA ACCTTCCCTT
  TCACTCCCTT ATGTAGCTCT TTAGAGGGCC AGGGAGACCA GAGTTTCTCA CACTCCAAGT
  TGTAACCTAT CAATGGGCAG GGAAATAAAG TGCGTCACTG TAATCATCTG CATATTCTAT
  TAAAAAGAAG TAATAAAATA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51670904	NES14639743	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36866672					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51670904	NES14639743	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:145408271 () rs orientation: forward

Symbol	Name	Function Class
Rr586822	regulatory region 586822	217 bp distal
Rr586823	regulatory region 586823	746 bp proximal