rs36865765 SNP Detail

Summary

• ID
  rs36865765
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:69767927 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTGTTGCCC TCCCCCTCGC
  TTCAGCGGGG AGTTTCGACT CTACCAGAGG GGCACGTATT TTGGTGGTGG TGCAAATGAT
  GATAGGGTGG GGATGGGGAA GAAAAGGAGG GAGGAGGGGA GGGGGAGATG GAGGAGGCAG
  CGGAGGCGAC AGTAGATAAA CCAGAGGTGC AAAGGTGAAT ACTGTAGGGC TTTAACCAAT
  K
  CTCAGAGGAT GCCTGTCAGC ATACATCCGT CGCAGACTTG GATGAGGGGC GAAGAGGCCC
  GGGTCTACGC GGAGCAAGGC TGCAGTCTGA AACTCGGCTC CCGGCTGCAA AGTGAGCCCC
  GGGGTTGAGC CCAAGCAGCT GGTCAGCTCA CCGGTTGTCA AAAGGCAAAG GAAGAAAACA
  AGCCACTTTG GCACTGACAT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C3H/HeJ	CAST/EiJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss50977784	NES13927084	PERLEGEN	MM_PANEL2	f	SNP	T	T	G	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	A/J	C3H/HeJ	CAST/EiJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs36865765					SNP	T	T	G	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50977784	NES13927084	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:69767927 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13263	CpG island 13263	within coordinates
Rr578229	regulatory region 578229	683 bp distal
Rr578230	regulatory region 578230	164 bp distal
Rr578231	regulatory region 578231	310 bp distal
Rr578232	regulatory region 578232	261 bp distal
Rr578233	regulatory region 578233	719 bp proximal
Rr578234	regulatory region 578234	837 bp proximal
Sptssb	serine palmitoyltransferase, small subunit B	Intron
Tssr903	transcription start site region 903	730 bp upstream
Tssr33557	transcription start site region 33557	1720 bp upstream
Tssr33558	transcription start site region 33558	693 bp upstream
Tssr33559	transcription start site region 33559	780 bp downstream