rs36863139 SNP Detail

Summary

• ID
  rs36863139
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:83696010 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACTGTCCCT GATCGTGCCA
  GGGAGATCTC TGGAGATAGT CAACAGCGGC AGCATCACCA GGAACCCTGT TACAAATAGA
  AATTCTCATG TCCTGGCCAA CATCTCCTGT ACCAGAGCAC CTCAGGGAGG GTCCAGAAGT
  GGAGAGCTGT TGTAGCCTTT CTGATAGAGC CAAGCTCCCG GCATGCACAC TGATCCTCAC
  R
  AGTGGTCCTT GAACCTGCGT CTGTCCCTAT CCTCTGCTAG GAAGTAAGTT TCCTGATTGC
  AGAGATGTGA CCATCTAGCT GGTCATTTGA TCTACGGTAG TAACATCTTG TGGGTGATGA
  CGTAAAGGCA CATCCTATAG GCTGGATGAT TGACTGGGTG TTTCTTCATT GTATGCTTGA
  GTAAATCTAC ACTTGATGTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss51559301	NES14677638	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs36863139					SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51559301	NES14677638	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:83696010 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13301	CpG island 13301	814 bp proximal
Gm7115	predicted gene 7115	1022 bp upstream
Gm26771	predicted gene, 26771	within coordinates
Gm66689	predicted gene, 66689	571 bp upstream
Rr578903	regulatory region 578903	706 bp proximal
Rr578904	regulatory region 578904	1226 bp proximal
Rr578905	regulatory region 578905	1529 bp proximal
Rr578906	regulatory region 578906	1658 bp proximal
Tssr33830	transcription start site region 33830	1237 bp downstream
Tssr33831	transcription start site region 33831	1270 bp downstream