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rs36858896 SNP Detail
Summary
  • ID
    rs36858896
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr6:41524801 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                CTTGGCTTTG AAAACAGGAC
    ACAAATATCC TATAGACATG AGGGTCGGGG CTGCCCAGAG GAACTAGCTC ACAAACACCT
    ACTAACTCTC CTTTCCTGTC AACAGCATCC TATCATCAGG GGGTTCTGTC TGCAACCATC
    CTCTATGAGA TCCTACTGGG GAAGGCCACC CTATATGCTG TGCTGGTCAG TGGCCTGGTG
    Y
    TGATGGCCAT GGTAAGAATG GTAGGATGGA CAAATGGTTG GAGGTATAGA CTTCAGTGTA
    TGGATATAAA GGGATCTCAG AGGAGGACCC AGCCCTGATA TCCTGCCATT TCAAAAAAGA
    CCATAAAAAA CACAGTGCAA AGCAAAAACA CAGGAATGCT TATGTTTGTA CTCCTGGAAG
    ATGAAGAGAA CCAAGGAGCT                                            
    
    Y = C/T
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
WSB/EiJ
ss51624270 NES14839702 PERLEGEN MM_PANEL2 f SNP C C C C C C C T C C C
SNP Consensus Information
SNP Consensus Type
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
WSB/EiJ
rs36858896 SNP C C C C C C C T C C C
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss51624270 NES14839702 PERLEGEN MM_PANEL f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr6:41524801 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Gm68268 predicted gene, 68268 1156 bp downstream
Rr149356 regulatory region 149356 2000 bp proximal
Tcrb T cell receptor beta chain within coordinates
Trbc2 T cell receptor beta, constant 2 Coding-Synonymous
Tssr1822 transcription start site region 1822 346 bp downstream
Tssr55948 transcription start site region 55948 1772 bp downstream
Tssr55949 transcription start site region 55949 1561 bp downstream
Tssr55950 transcription start site region 55950 1290 bp downstream
Tssr55951 transcription start site region 55951 559 bp downstream
Tssr55952 transcription start site region 55952 489 bp downstream
Tssr55953 transcription start site region 55953 482 bp downstream
Tssr55954 transcription start site region 55954 432 bp downstream
Tssr55955 transcription start site region 55955 403 bp downstream
Tssr55956 transcription start site region 55956 359 bp downstream
Tssr55957 transcription start site region 55957 73 bp downstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
03/25/2025
MGI 6.24
The Jackson Laboratory