rs36858896 SNP Detail

Summary

• ID
  rs36858896
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:41524801 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTGGCTTTG AAAACAGGAC
  ACAAATATCC TATAGACATG AGGGTCGGGG CTGCCCAGAG GAACTAGCTC ACAAACACCT
  ACTAACTCTC CTTTCCTGTC AACAGCATCC TATCATCAGG GGGTTCTGTC TGCAACCATC
  CTCTATGAGA TCCTACTGGG GAAGGCCACC CTATATGCTG TGCTGGTCAG TGGCCTGGTG
  Y
  TGATGGCCAT GGTAAGAATG GTAGGATGGA CAAATGGTTG GAGGTATAGA CTTCAGTGTA
  TGGATATAAA GGGATCTCAG AGGAGGACCC AGCCCTGATA TCCTGCCATT TCAAAAAAGA
  CCATAAAAAA CACAGTGCAA AGCAAAAACA CAGGAATGCT TATGTTTGTA CTCCTGGAAG
  ATGAAGAGAA CCAAGGAGCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss51624270	NES14839702	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	T	C	C	C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs36858896					SNP	C	C	C	C	C	C	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51624270	NES14839702	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:41524801 () rs orientation: forward

Symbol	Name	Function Class
Gm68268	predicted gene, 68268	1156 bp downstream
Rr149356	regulatory region 149356	2000 bp proximal
Tcrb	T cell receptor beta chain	within coordinates
Trbc2	T cell receptor beta, constant 2	Coding-Synonymous
Tssr1822	transcription start site region 1822	346 bp downstream
Tssr55948	transcription start site region 55948	1772 bp downstream
Tssr55949	transcription start site region 55949	1561 bp downstream
Tssr55950	transcription start site region 55950	1290 bp downstream
Tssr55951	transcription start site region 55951	559 bp downstream
Tssr55952	transcription start site region 55952	489 bp downstream
Tssr55953	transcription start site region 55953	482 bp downstream
Tssr55954	transcription start site region 55954	432 bp downstream
Tssr55955	transcription start site region 55955	403 bp downstream
Tssr55956	transcription start site region 55956	359 bp downstream
Tssr55957	transcription start site region 55957	73 bp downstream