CTTGGCTTTG AAAACAGGAC ACAAATATCC TATAGACATG AGGGTCGGGG CTGCCCAGAG GAACTAGCTC ACAAACACCT ACTAACTCTC CTTTCCTGTC AACAGCATCC TATCATCAGG GGGTTCTGTC TGCAACCATC CTCTATGAGA TCCTACTGGG GAAGGCCACC CTATATGCTG TGCTGGTCAG TGGCCTGGTG Y TGATGGCCAT GGTAAGAATG GTAGGATGGA CAAATGGTTG GAGGTATAGA CTTCAGTGTA TGGATATAAA GGGATCTCAG AGGAGGACCC AGCCCTGATA TCCTGCCATT TCAAAAAAGA CCATAAAAAA CACAGTGCAA AGCAAAAACA CAGGAATGCT TATGTTTGTA CTCCTGGAAG ATGAAGAGAA CCAAGGAGCT Y = C/T Note: Sequence in lower case indicates low-complexity or repetitive sequence |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type | A/J |
AKR/J |
BALB/cByJ |
BTBR T<+> Itpr3 |
C3H/HeJ |
CAST/EiJ |
DBA/2J |
MOLF/EiJ |
NOD/ShiLtJ |
NZW/LacJ |
WSB/EiJ |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ss51624270 | NES14839702 | PERLEGEN | MM_PANEL2 | f | SNP | C | C | C | C | C | C | C | T | C | C | C |
SNP Consensus Information | ||||||||||||||||
SNP | Consensus Type | A/J |
AKR/J |
BALB/cByJ |
BTBR T<+> Itpr3 |
C3H/HeJ |
CAST/EiJ |
DBA/2J |
MOLF/EiJ |
NOD/ShiLtJ |
NZW/LacJ |
WSB/EiJ |
||||
rs36858896 | SNP | C | C | C | C | C | C | C | T | C | C | C |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type |
Alleles |
---|---|---|---|---|---|---|
ss51624270 | NES14839702 | PERLEGEN | MM_PANEL | f | SNP | C/T |
Location: Chr6:41524801 () rs orientation: forward | ||||||||
Symbol | Name | Transcript | Protein | Function Class |
Allele | Residue | Codon Position |
AA Position |
---|---|---|---|---|---|---|---|---|
Gm68268 | predicted gene, 68268 | 1156 bp downstream | ||||||
Rr149356 | regulatory region 149356 | 2000 bp proximal | ||||||
Tcrb | T cell receptor beta chain | within coordinates | ||||||
Trbc2 | T cell receptor beta, constant 2 | Coding-Synonymous | ||||||
Tssr1822 | transcription start site region 1822 | 346 bp downstream | ||||||
Tssr55948 | transcription start site region 55948 | 1772 bp downstream | ||||||
Tssr55949 | transcription start site region 55949 | 1561 bp downstream | ||||||
Tssr55950 | transcription start site region 55950 | 1290 bp downstream | ||||||
Tssr55951 | transcription start site region 55951 | 559 bp downstream | ||||||
Tssr55952 | transcription start site region 55952 | 489 bp downstream | ||||||
Tssr55953 | transcription start site region 55953 | 482 bp downstream | ||||||
Tssr55954 | transcription start site region 55954 | 432 bp downstream | ||||||
Tssr55955 | transcription start site region 55955 | 403 bp downstream | ||||||
Tssr55956 | transcription start site region 55956 | 359 bp downstream | ||||||
Tssr55957 | transcription start site region 55957 | 73 bp downstream |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) |
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last database update 03/25/2025 MGI 6.24 |
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