rs36858052 SNP Detail

Summary

• ID
  rs36858052
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:135870529 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGGAATGCC CCAGTTCATG
  TAAAAGAAGG CACCTGACAA CATGACATAA CAAATGTGCT TATGTGAGGA GGCCTCCAGC
  CTATGTGAGG GAAGGCCATG GTCCCTTTGA GAGAGCACCC TCATCTATGT GCAGGAACAC
  CTGGCCTTGG GGGAAGCACC TGGCTCATGG CTAAGACCCC ATGCTCTTCT CATGTCAATT
  K
  GTCAGCAGTG GAATTCTCAC TCTCAATGAT GTGTTCATTC AGGGAAAGTA GTGATCTTTC
  TGATAAACTG ATAAATGACC TGAGTGTCAC AAGGATGAGG TAGAATCCTG ACCCTCAGAT
  CTCTGGTAAC CTAAGCCAGA ATTGGTTTGT TACCTTTACA ATGAGGTAAG CAGTTTCATC
  ATGTGACTTT TCTAATAGAC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51642428	NES14646550	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	G	T	T	T	T	T	T	G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36858052					SNP	T	T	T	T	T	T	G	T	T	T	T	T	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51642428	NES14646550	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:135870529 () rs orientation: forward

Symbol	Name	Function Class
Bank1	B cell scaffold protein with ankyrin repeats 1	Intron
Rr585808	regulatory region 585808	566 bp proximal