rs36857120 SNP Detail

Summary

• ID
  rs36857120
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:113304058 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTTCCAAAC CTCGAGGGCT
  GCGCAGGAGG AGGAGGCGCG CGCCGGGAGG TCCTGGGGGC GGGGCCACGT CCGGAGGAAG
  AGGCGGGGCG TGCTGCACGG GAGAGCGGAG TGGGGCGTTT AGGGGTTTGG TGGTGTGCGA
  GAGGCTTTCC TACGAGGAGA GGGAAATTCA TTCAACAGGG ACTCAAATTA AAATTACACC
  R
  GACCCATAAG CTAGGACCCA CGGTGCTACA CTCCCGGTGT GTGTGGTCAC TTGTGTGCGA
  GGCTTTAGGA CTTGGGAAAG TCGAGTTCTG ATTGGACAGT GCCGTAATGG GCTGGGGCTG
  CTAGCCGAAT GTTATTCCGT TCCTGGCTGC CTAGCAGCAT GAGACATCGC ACCCTAAGCT
  CCAGCCCGGC CCTCTGGGCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
ss51842355	NES14762168	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	A	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
rs36857120					SNP	G	G	G	G	G	G	G	G	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51842355	NES14762168	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:113304058 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi17839	CpG island 17839			within coordinates
Gm15492	predicted gene 15492			277 bp upstream
Ogg1	8-oxoguanine DNA-glycosylase 1			mRNA-UTR
				Noncoding-Transcript-Variant
Rr399830	regulatory region 399830			211 bp downstream
Rr636489	regulatory region 636489			376 bp distal
Rr636490	regulatory region 636490			115 bp distal
Tssr58194	transcription start site region 58194			84 bp downstream
Tssr58195	transcription start site region 58195			66 bp downstream
Tssr58196	transcription start site region 58196			128 bp upstream
Tssr58197	transcription start site region 58197			146 bp upstream
Tssr62435	transcription start site region 62435			412 bp upstream
Tssr62436	transcription start site region 62436			347 bp upstream