rs36856558 SNP Detail

Summary

• ID
  rs36856558
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:33968485 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTGGAAAAC TTCAAGTCTC
  ACTGTTGTTC TTAGGGGCTA CCTTGCAGAG AAAAGCAGTC TCCAGTGGAA GATGGAGGAG
  TTGCTTTTGG CTCATAGATT CTCTTGACGC ACAAACATCT GAGTGGCCAA AATGAGAGTC
  AACTAAATCC CCAGGTTTCT TGCAAATCAA CTGGGAAATC TTCCACACCT ATATGGGGCA
  R
  AAATACCCGA GTTACCAGAT CAGCATTTTT GATCCATAAG ACCCCACCCA CTCACACTCA
  ATCCTGCTTT AGTGGAGAGA TCTATTAAGA TGTTGTTAGA TTACTAGGCT CCTCCCAGGG
  TCCTAGCAAT TGCTTACGTC ATCATCTACT GCCATCACCT GTGGGGCCCC GTGTAAAAGG
  ATGGCTTGTC ACCTCACCTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51592425	NES14853115	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36856558					SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51592425	NES14853115	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:33968485 () rs orientation: forward

Symbol	Name	Function Class
Gm13853	predicted gene 13853	within coordinates
Gm67665	predicted gene, 67665	within coordinates
Rr628235	regulatory region 628235	508 bp proximal
Rr628236	regulatory region 628236	649 bp proximal
Tssr60221	transcription start site region 60221	625 bp downstream
Tssr60222	transcription start site region 60222	822 bp downstream
Tssr60223	transcription start site region 60223	863 bp downstream